[HTML][HTML] The influenza virus resource at the National Center for Biotechnology Information

Y Bao, P Bolotov, D Dernovoy, B Kiryutin… - Journal of …, 2008 - Am Soc Microbiol
Y Bao, P Bolotov, D Dernovoy, B Kiryutin, L Zaslavsky, T Tatusova, J Ostell, D Lipman
Journal of virology, 2008Am Soc Microbiol
Inffuenza epidemics cause morbidity and mortality worldwide (4). Each year in the United
States, more than 200,000 patients are admitted to hospitals because of inffuenza and there
are approximately 36,000 inffuenza-related deaths (14). In recent years, several subtypes of
avian inffuenza viruses have jumped host species to infect humans. The H5N1 subtype, in
particular, has been reported in 328 human cases and has caused 200 human deaths in 12
countries (World Health Organization, http://www. who. int/csr/disease/avian_inffuenza …
Inffuenza epidemics cause morbidity and mortality worldwide (4). Each year in the United States, more than 200,000 patients are admitted to hospitals because of inffuenza and there are approximately 36,000 inffuenza-related deaths (14). In recent years, several subtypes of avian inffuenza viruses have jumped host species to infect humans. The H5N1 subtype, in particular, has been reported in 328 human cases and has caused 200 human deaths in 12 countries (World Health Organization, http://www. who. int/csr/disease/avian_inffuenza/country/cases_table_2007_09_10/en/index. html). These viruses have the potential to cause a pandemic in humans. Antiviral drugs and vaccines must be developed to minimize the damage that such a pandemic would bring. To achieve this, it is vital that researchers have free access to viral sequences in a timely fashion, and sequence analysis tools need to be readily available. Historically, the number of inffuenza virus sequences in public databases has been far less than those of some well-studied viruses, such as human immunodeficiency virus. The number of complete inffuenza virus genomes has been even smaller. In addition, many of the sequences were collected in the course of inffuenza surveillance programs that prioritized antigenically novel isolates. Although collecting antigenically novel isolates is appropriate for surveillance, it results in biased samples of sequenced isolates that are not representative of community cases of inffuenza (2, 13). Therefore, in 2004, the National Institute of Allergy and Infectious Diseases (NIAID) launched the Inffuenza Genome Sequencing Project (7), which aims to rapidly sequence inffuenza viruses from samples collected all over the world. Viral sequences were generated at the J. Craig Venter Institute, annotated at the National Center for Biotechnology Information (NCBI), and deposited in GenBank. In just over 2 years after the initiation of the project, more than 2,000 complete genomes of inffuenza viruses A and B had been deposited in GenBank. To help the research community to make full use of the wealth of information from such a large amount of data, which will be increasing continuously, the Inffuenza Virus Resource was created at NCBI in 2004.
American Society for Microbiology